mode type dose rep time beta_type abs abs_corr_factor abs_corr abs_scaled vmax cfu_total meanCFU_Res sample_vol abundance res_abundance res_abund_mean meanPc nitro_vol(ml) nitro(mg/ml) nitro(mg) initVol well_vol (_l) a_beta data_extra data_intra broth R 0 1 10 intra 0.0968 2 0.1936 1936000 11.944 2850000000 2712500000 0.002 5700000 5700000 547925000 0.951754386 0.002 10 0.02 500 202 0.00353333 day2_extra_100x day2_intra broth R 0 2 10 intra 0.109 2 0.218 2180000 11.35333333 2775000000 2662500000 0.002 5550000 5550000 537825000 0.959459459 0.002 10 0.02 500 202 0.004053363 day2_extra_100x day2_intra broth R 0 3 10 intra 0.106066667 2 0.212133333 2121333.333 9.288333333 2800000000 2900000000 0.002 5600000 5600000 585800000 1 0.002 10 0.02 500 202 0.003621259 day2_extra_100x day2_intra broth HR 0 1 10 intra 0.0803 2 0.1606 1606000 2.896666667 5200000000 1712500000 0.002 10400000 3100000 345925000 0.329326923 0.002 10 0.02 500 202 0.004642625 day2_extra_100x day2_intra broth HR 0 2 10 intra 0.086433333 2 0.172866667 1728666.667 2.909666667 5500000000 1787500000 0.002 11000000 2900000 361075000 0.325 0.002 10 0.02 500 202 0.004787556 day2_extra_100x day2_intra broth HR 0 3 10 intra 0.024066667 2 0.048133333 481333.3333 2.176 5850000000 2325000000 0.002 11700000 4300000 469650000 0.397435897 0.002 10 0.02 500 202 0.001024877 day2_extra_100x day2_intra broth LR 0 1 10 intra 0.020566667 2 0.041133333 411333.3333 0.235 5950000000 125000000 0.02 119000000 0 25250000 0.021008403 0.002 10 0.02 500 202 0.016290429 day2_extra_100x day2_intra broth LR 0 2 10 intra 0.046333333 2 0.092666667 926666.6667 0.23 5050000000 201250000 0.02 101000000 2000000 40652500 0.039851485 0.002 10 0.02 500 202 0.022794826 day2_extra_100x day2_intra broth LR 0 3 10 intra 0.037 2 0.074 740000 0.446 5100000000 140000000 0.02 102000000 0 28280000 0.02745098 0.002 10 0.02 500 202 0.026166902 day2_extra_100x day2_intra broth S 0 1 10 intra 0.001866667 2 0.003733333 37333.33333 0.071666667 7575000000 0 0.02 151500000 0 0 0 0.002 10 0.02 500 202 #DIV/0! day2_extra_100x day2_intra broth S 0 2 10 intra 0.0342 2 0.0684 684000 0.167333333 6700000000 0 0.02 134000000 0 0 0 0.002 10 0.02 500 202 #DIV/0! day2_extra_100x day2_intra broth S 0 3 10 intra 0.0428 2 0.0856 856000 0.112 7125000000 0 0.02 142500000 0 0 0 0.002 10 0.02 500 202 #DIV/0! day2_extra_100x day2_intra broth R 1000 1 10 intra 0.167566667 2 0.335133333 3351333.333 17.91566667 1625000000 1562500000 0.002 3250000 3250000 315625000 0.961538462 0.002 10 0.02 500 202 0.010618086 day2_extra_100x day2_intra broth R 1000 2 10 intra 0.203133333 2 0.406266667 4062666.667 21.86233333 2200000000 1925000000 0.002 4400000 4400000 388850000 0.875 0.002 10 0.02 500 202 0.010447902 day2_extra_100x day2_intra broth R 1000 3 10 intra 0.222466667 2 0.444933333 4449333.333 23.56033333 1725000000 1537500000 0.002 3450000 3450000 310575000 0.891304348 0.002 10 0.02 500 202 0.014326116 day2_extra_100x day2_intra broth HR 1000 1 10 intra 0.180033333 2 0.360066667 3600666.667 18.862 1325000000 1250000000 0.002 2650000 2650000 252500000 0.943396226 0.002 10 0.02 500 202 0.014260066 day2_extra_100x day2_intra broth HR 1000 2 10 intra 0.181633333 2 0.363266667 3632666.667 19.332 1725000000 1612500000 0.002 3450000 3450000 325725000 0.934782609 0.002 10 0.02 500 202 0.011152557 day2_extra_100x day2_intra broth HR 1000 3 10 intra 0.175 2 0.35 3500000 18.19566667 1350000000 1712500000 0.002 2700000 2700000 345925000 1 0.002 10 0.02 500 202 0.0101178 day2_extra_100x day2_intra broth LR 1000 1 10 intra 0.148333333 2 0.296666667 2966666.667 15.56333333 1700000000 1737500000 0.002 3400000 3400000 350975000 1 0.002 10 0.02 500 202 0.008452644 day2_extra_100x day2_intra broth LR 1000 2 10 intra 0.154533333 2 0.309066667 3090666.667 16.417 1700000000 1700000000 0.002 3400000 3400000 343400000 1 0.002 10 0.02 500 202 0.009000194 day2_extra_100x day2_intra broth LR 1000 3 10 intra 0.151666667 2 0.303333333 3033333.333 16.762 1925000000 1787500000 0.002 3850000 3850000 361075000 0.928571429 0.002 10 0.02 500 202 0.00840084 day2_extra_100x day2_intra biofilm R 0 1 10 intra 1.233833 0.900990099 1.111671317 11116713.17 69.3 451000000 343750000 0.18 81180000 61650000 62562500 0.762195122 0.002 10 0.02 5000 182 0.177689721 run2_10aug 08-Aug biofilm R 0 2 10 intra 1.328083 0.900990099 1.196589634 11965896.34 #DIV/0! 432000000 385000000 0.18 77760000 56700000 70070000 0.891203704 0.002 10 0.02 5000 182 0.170770606 run2_10aug 08-Aug biofilm R 0 3 10 intra 1.286033 0.900990099 1.158703 11587030 #DIV/0! 647000000 326250000 0.18 116460000 89550000 59377500 0.504250386 0.002 10 0.02 5000 182 0.195141762 run2_10aug 08-Aug biofilm HR 0 1 10 intra 1.244083 0.900990099 1.120906465 11209064.65 271.8 1380000000 223750000 0.18 248400000 54000000 40722500 0.162137681 0.002 10 0.02 5000 182 0.275254826 run2_10aug 08-Aug biofilm HR 0 2 10 intra 1.271083 0.900990099 1.145233198 11452331.98 288 820000000 161250000 0.18 147600000 27000000 29347500 0.196646341 0.002 10 0.02 5000 182 0.390231944 run2_10aug 08-Aug biofilm HR 0 3 10 intra 1.247783 0.900990099 1.124240129 11242401.29 311.1 1340000000 287500000 0.18 241200000 63000000 52325000 0.214552239 0.002 10 0.02 5000 182 0.214857167 run2_10aug 08-Aug biofilm LR 0 1 10 intra 0.891633 0.900990099 0.803352505 8033525.05 76.454 770000000 24250000 0.18 138600000 4500000 4413500 0.031493506 0.002 10 0.02 5000 182 1.820216393 run2_10aug 08-Aug biofilm LR 0 2 10 intra 0.712833 0.900990099 0.642255475 6422554.752 60.9445 890000000 18125000 0.18 160200000 4500000 3298750 0.020365169 0.002 10 0.02 5000 182 1.9469662 run2_10aug 08-Aug biofilm LR 0 3 10 intra 0.763433 0.900990099 0.687845574 6878455.743 65.155 1380000000 25000000 0.18 248400000 9000000 4550000 0.018115942 0.002 10 0.02 5000 182 1.511748515 run2_10aug 08-Aug biofilm S 0 1 10 intra 0.071833 0.900990099 0.064720822 647208.2178 4.0415 586000000 0 0.18 105480000 0 0 0 0.002 10 0.02 5000 182 #DIV/0! run2_10aug 08-Aug biofilm S 0 2 10 intra 0.077883 0.900990099 0.070171812 701718.1188 3.927 532000000 0 0.18 95760000 0 0 0 0.002 10 0.02 5000 182 #DIV/0! run2_10aug 08-Aug biofilm S 0 3 10 intra 0.060533 0.900990099 0.054539634 545396.3366 2.4945 738000000 0 0.18 132840000 0 0 0 0.002 10 0.02 5000 182 #DIV/0! run2_10aug 08-Aug biofilm R 1000 1 10 intra 1.279333 0.900990099 1.152666366 11526663.66 #DIV/0! 732000000 552500000 0.18 131760000 105300000 100555000 0.754781421 0.002 10 0.02 5000 182 0.114630438 run2_10aug 08-Aug biofilm R 1000 2 10 intra 1.287083 0.900990099 1.15964904 11596490.4 #DIV/0! 854000000 582500000 0.18 153720000 122400000 106015000 0.682084309 0.002 10 0.02 5000 182 0.109385374 run2_10aug 08-Aug biofilm R 1000 3 10 intra 1.187683 0.900990099 1.070090624 10700906.24 52.517 750000000 548750000 0.18 135000000 107100000 99872500 0.731666667 0.002 10 0.02 5000 182 0.107145673 run2_10aug 08-Aug biofilm HR 1000 1 10 intra 1.238483 0.900990099 1.115860921 11158609.21 198.4 1240000000 228750000 0.18 223200000 63000000 41632500 0.184475806 0.002 10 0.02 5000 182 0.268026403 run2_10aug 08-Aug biofilm HR 1000 2 10 intra 1.290783 0.900990099 1.162982703 11629827.03 459 1010000000 167500000 0.18 181800000 40500000 30485000 0.165841584 0.002 10 0.02 5000 182 0.381493424 run2_10aug 08-Aug biofilm HR 1000 3 10 intra 1.264833 0.900990099 1.13960201 11396020.1 475.7 1020000000 296250000 0.18 183600000 63000000 53917500 0.290441176 0.002 10 0.02 5000 182 0.211360321 run2_10aug 08-Aug biofilm LR 1000 1 10 intra 1.160433 0.900990099 1.045538644 10455386.44 407.535 980000000 117250000 0.18 176400000 27000000 21339500 0.119642857 0.002 10 0.02 5000 182 0.489954612 run2_10aug 08-Aug biofilm LR 1000 2 10 intra 1.250833 0.900990099 1.126988149 11269881.49 323.485 1020000000 101500000 0.18 183600000 27000000 18473000 0.099509804 0.002 10 0.02 5000 182 0.61007316 run2_10aug 08-Aug biofilm LR 1000 3 10 intra 1.208083 0.900990099 1.088470822 10884708.22 373.885 1210000000 62500000 0.18 217800000 22500000 11375000 0.051652893 0.002 10 0.02 5000 182 0.956897426 run2_10aug 08-Aug biofilm S 1000 1 10 intra 0.052383 0.900990099 0.047196564 471965.6436 -0.6105 148000000 0 0.18 26640000 0 0 0 0.002 10 0.02 5000 182 #DIV/0! run2_10aug 08-Aug biofilm S 1000 2 10 intra 0.028433 0.900990099 0.025617851 256178.5149 1.2855 242000000 0 0.18 43560000 0 0 0 0.002 10 0.02 5000 182 #DIV/0! run2_10aug 08-Aug biofilm S 1000 3 10 intra 0.030283 0.900990099 0.027284683 272846.8317 0.3685 188000000 0 0.18 33840000 0 0 0 0.002 10 0.02 5000 182 #DIV/0! run2_10aug 08-Aug broth R 0 1 10 extra 0.739733 1 0.739733 7397330 64.00366667 2850000000 2712500000 0.002 5700000 5700000 547925000 0.951754386 0.002 10 0.02 1000 202 0.013500625 day2_extra_100x day2_intra broth R 0 2 10 extra 0.751933 1 0.751933 7519330 64.18266667 2775000000 2662500000 0.002 5550000 5550000 537825000 0.959459459 0.002 10 0.02 1000 202 0.013980998 day2_extra_100x day2_intra broth R 0 3 10 extra 0.783066333 1 0.783066333 7830663.333 70.01733333 2800000000 2900000000 0.002 5600000 5600000 585800000 1 0.002 10 0.02 1000 202 0.013367469 day2_extra_100x day2_intra broth HR 0 1 10 extra 0.318133 1 0.318133 3181330 21.21133333 5200000000 1712500000 0.002 10400000 3100000 345925000 0.329326923 0.002 10 0.02 1000 202 0.009196589 day2_extra_100x day2_intra broth HR 0 2 10 extra 0.266666333 1 0.266666333 2666663.333 19.50433333 5500000000 1787500000 0.002 11000000 2900000 361075000 0.325 0.002 10 0.02 1000 202 0.007385345 day2_extra_100x day2_intra broth HR 0 3 10 extra 0.356633 1 0.356633 3566330 23.65666667 5850000000 2325000000 0.002 11700000 4300000 469650000 0.397435897 0.002 10 0.02 1000 202 0.007593591 day2_extra_100x day2_intra broth LR 0 1 10 extra 0.161133333 1 0.161133333 1611333.333 14.87033333 5950000000 125000000 0.02 119000000 0 25250000 0.021008403 0.002 10 0.02 1000 202 0.063815182 day2_extra_100x day2_intra broth LR 0 2 10 extra 0.0883 1 0.0883 883000 13.076 5050000000 201250000 0.02 101000000 2000000 40652500 0.039851485 0.002 10 0.02 1000 202 0.021720681 day2_extra_100x day2_intra broth LR 0 3 10 extra 0.130566667 1 0.130566667 1305666.667 11.79266667 5100000000 140000000 0.02 102000000 0 28280000 0.02745098 0.002 10 0.02 1000 202 0.04616926 day2_extra_100x day2_intra broth S 0 1 10 extra -0.002566667 1 -0.002566667 -25666.66667 0.148333333 7575000000 0 0.02 151500000 0 0 0 0.002 10 0.02 1000 202 #DIV/0! day2_extra_100x day2_intra broth S 0 2 10 extra -0.008333333 1 -0.008333333 -83333.33333 0.13 6700000000 0 0.02 134000000 0 0 0 0.002 10 0.02 1000 202 #DIV/0! day2_extra_100x day2_intra broth S 0 3 10 extra -0.001333333 1 -0.001333333 -13333.33333 0.121333333 7125000000 0 0.02 142500000 0 0 0 0.002 10 0.02 1000 202 #DIV/0! day2_extra_100x day2_intra broth R 1000 1 10 extra 1.102766333 1 1.102766333 11027663.33 111.7163333 1625000000 1562500000 0.002 3250000 3250000 315625000 0.961538462 0.002 10 0.02 1000 202 0.034939131 day2_extra_100x day2_intra broth R 1000 2 10 extra 1.256933 1 1.256933 12569330 126.5133333 2200000000 1925000000 0.002 4400000 4400000 388850000 0.875 0.002 10 0.02 1000 202 0.032324367 day2_extra_100x day2_intra broth R 1000 3 10 extra 1.250733 1 1.250733 12507330 122.3166667 1725000000 1537500000 0.002 3450000 3450000 310575000 0.891304348 0.002 10 0.02 1000 202 0.040271529 day2_extra_100x day2_intra broth HR 1000 1 10 extra 0.954033 1 0.954033 9540330 81.81366667 1325000000 1250000000 0.002 2650000 2650000 252500000 0.943396226 0.002 10 0.02 1000 202 0.037783485 day2_extra_100x day2_intra broth HR 1000 2 10 extra 0.962533 1 0.962533 9625330 81.47266667 1725000000 1612500000 0.002 3450000 3450000 325725000 0.934782609 0.002 10 0.02 1000 202 0.02955048 day2_extra_100x day2_intra broth HR 1000 3 10 extra 1.057966333 1 1.057966333 10579663.33 91.84733333 1350000000 1712500000 0.002 2700000 2700000 345925000 1 0.002 10 0.02 1000 202 0.030583691 day2_extra_100x day2_intra broth LR 1000 1 10 extra 0.703333667 1 0.703333667 7033336.667 68.88233333 1700000000 1737500000 0.002 3400000 3400000 350975000 1 0.002 10 0.02 1000 202 0.020039424 day2_extra_100x day2_intra broth LR 1000 2 10 extra 0.706567 1 0.706567 7065670 66.21 1700000000 1700000000 0.002 3400000 3400000 343400000 1 0.002 10 0.02 1000 202 0.020575626 day2_extra_100x day2_intra broth LR 1000 3 10 extra 0.686000333 1 0.686000333 6860003.333 65.00333333 1925000000 1787500000 0.002 3850000 3850000 361075000 0.928571429 0.002 10 0.02 1000 202 0.018998832 day2_extra_100x day2_intra biofilm R 0 1 10 extra 0.32865 0.900990099 0.296110396 2961103.96 8.9315 451000000 343750000 0.18 81180000 61650000 62562500 0.762195122 0.002 10 0.02 5000 182 0.047330333 run2_10aug 08-Aug biofilm R 0 2 10 extra 0.32425 0.900990099 0.29214604 2921460.396 9.1095 432000000 385000000 0.18 77760000 56700000 70070000 0.891203704 0.002 10 0.02 5000 182 0.041693455 run2_10aug 08-Aug biofilm R 0 3 10 extra 0.29555 0.900990099 0.266287624 2662876.238 5.945 647000000 326250000 0.18 116460000 89550000 59377500 0.504250386 0.002 10 0.02 5000 182 0.044846554 run2_10aug 08-Aug biofilm HR 0 1 10 extra 0.25425 0.900990099 0.229076733 2290767.327 2.5665 1380000000 223750000 0.18 248400000 54000000 40722500 0.162137681 0.002 10 0.02 5000 182 0.056253111 run2_10aug 08-Aug biofilm HR 0 2 10 extra 0.24865 0.900990099 0.224031188 2240311.881 1.3225 820000000 161250000 0.18 147600000 27000000 29347500 0.196646341 0.002 10 0.02 5000 182 0.076337401 run2_10aug 08-Aug biofilm HR 0 3 10 extra 0.245 0.900990099 0.220742574 2207425.743 1.9895 1340000000 287500000 0.18 241200000 63000000 52325000 0.214552239 0.002 10 0.02 5000 182 0.042186827 run2_10aug 08-Aug biofilm LR 0 1 10 extra 0.2306 0.900990099 0.207768317 2077683.168 0.604 770000000 24250000 0.18 138600000 4500000 4413500 0.031493506 0.002 10 0.02 5000 182 0.470756354 run2_10aug 08-Aug biofilm LR 0 2 10 extra 0.2303 0.900990099 0.20749802 2074980.198 0.266 890000000 18125000 0.18 160200000 4500000 3298750 0.020365169 0.002 10 0.02 5000 182 0.629020143 run2_10aug 08-Aug biofilm LR 0 3 10 extra 0.231 0.900990099 0.208128713 2081287.129 0.4635 1380000000 25000000 0.18 248400000 9000000 4550000 0.018115942 0.002 10 0.02 5000 182 0.457425743 run2_10aug 08-Aug biofilm S 0 1 10 extra 0.2307 0.900990099 0.207858416 2078584.158 -0.117 586000000 0 0.18 105480000 0 0 0 0.002 10 0.02 5000 182 #DIV/0! run2_10aug 08-Aug biofilm S 0 2 10 extra 0.2276 0.900990099 0.205065347 2050653.465 0.202 532000000 0 0.18 95760000 0 0 0 0.002 10 0.02 5000 182 #DIV/0! run2_10aug 08-Aug biofilm S 0 3 10 extra 0.2295 0.900990099 0.206777228 2067772.277 0.153 738000000 0 0.18 132840000 0 0 0 0.002 10 0.02 5000 182 #DIV/0! run2_10aug 08-Aug biofilm R 1000 1 10 extra 0.32695 0.900990099 0.294578713 2945787.129 9.016 732000000 552500000 0.18 131760000 105300000 100555000 0.754781421 0.002 10 0.02 5000 182 0.029295282 run2_10aug 08-Aug biofilm R 1000 2 10 extra 0.30465 0.900990099 0.274486634 2744866.337 7.6415 854000000 582500000 0.18 153720000 122400000 106015000 0.682084309 0.002 10 0.02 5000 182 0.025891302 run2_10aug 08-Aug biofilm R 1000 3 10 extra 0.3188 0.900990099 0.287235644 2872356.436 8.8575 750000000 548750000 0.18 135000000 107100000 99872500 0.731666667 0.002 10 0.02 5000 182 0.028760234 run2_10aug 08-Aug biofilm HR 1000 1 10 extra 0.2698 0.900990099 0.243087129 2430871.287 3.9705 1240000000 228750000 0.18 223200000 63000000 41632500 0.184475806 0.002 10 0.02 5000 182 0.05838879 run2_10aug 08-Aug biofilm HR 1000 2 10 extra 0.2538 0.900990099 0.228671287 2286712.871 2.5335 1010000000 167500000 0.18 181800000 40500000 30485000 0.165841584 0.002 10 0.02 5000 182 0.075011083 run2_10aug 08-Aug biofilm HR 1000 3 10 extra 0.25265 0.900990099 0.227635149 2276351.485 2.3845 1020000000 296250000 0.18 183600000 63000000 53917500 0.290441176 0.002 10 0.02 5000 182 0.042219159 run2_10aug 08-Aug biofilm LR 1000 1 10 extra 0.25885 0.900990099 0.233221287 2332212.871 2.493 980000000 117250000 0.18 176400000 27000000 21339500 0.119642857 0.002 10 0.02 5000 182 0.109290886 run2_10aug 08-Aug biofilm LR 1000 2 10 extra 0.23825 0.900990099 0.214660891 2146608.911 1.1515 1020000000 101500000 0.18 183600000 27000000 18473000 0.099509804 0.002 10 0.02 5000 182 0.116202507 run2_10aug 08-Aug biofilm LR 1000 3 10 extra 0.2445 0.900990099 0.220292079 2202920.792 1.3405 1210000000 62500000 0.18 217800000 22500000 11375000 0.051652893 0.002 10 0.02 5000 182 0.193663366 run2_10aug 08-Aug biofilm S 1000 1 10 extra 0.2385 0.900990099 0.214886139 2148861.386 0.3255 148000000 0 0.18 26640000 0 0 0 0.002 10 0.02 5000 182 #DIV/0! run2_10aug 08-Aug biofilm S 1000 2 10 extra 0.22025 0.900990099 0.198443069 1984430.693 0.486 242000000 0 0.18 43560000 0 0 0 0.002 10 0.02 5000 182 #DIV/0! run2_10aug 08-Aug biofilm S 1000 3 10 extra 0.2286 0.900990099 0.205966337 2059663.366 0.3215 188000000 0 0.18 33840000 0 0 0 0.002 10 0.02 5000 182 #DIV/0! run2_10aug 08-Aug