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dc.contributor.authorSong, C
dc.contributor.authorSimmons, BI
dc.contributor.authorFortin, M-J
dc.contributor.authorGonzalez, A
dc.date.accessioned2022-11-03T09:31:59Z
dc.date.issued2022-09-29
dc.date.updated2022-11-02T17:40:09Z
dc.description.abstractA ubiquitous pattern in ecological systems is that more abundant species tend to be more generalist; that is, they interact with more species or can occur in wider range of habitats. However, there is no consensus on whether generalism drives abundance (a selection process) or abundance drives generalism (a drift process). As it is difficult to conduct direct experiments to solve this chicken-and-egg dilemma, previous studies have used a causal discovery method based on formal logic and have found that abundance drives generalism. Here, we refine this method by correcting its bias regarding skewed distributions, and employ two other independent causal discovery methods based on nonparametric regression and on information theory, respectively. Contrary to previous work, all three independent methods strongly indicate that generalism drives abundance when applied to datasets on plant-hummingbird communities and reef fishes. Furthermore, we find that selection processes are more important than drift processes in structuring multispecies systems when the environment is variable. Our results showcase the power of the computational causal discovery approach to aid ecological research.en_GB
dc.description.sponsorshipRoyal Commission for the Exhibition of 1851 Research Fellowshipen_GB
dc.description.sponsorshipCRC in Spatial Ecologyen_GB
dc.description.sponsorshipLiber Ero Chair in Biodiversity Conservationen_GB
dc.format.extente1010302-
dc.format.mediumElectronic-eCollection
dc.identifier.citationVol. 18 (9), article e1010302en_GB
dc.identifier.doihttps://doi.org/10.1371/journal.pcbi.1010302
dc.identifier.urihttp://hdl.handle.net/10871/131580
dc.identifierORCID: 0000-0002-2751-9430 (Simmons, Benno I)
dc.language.isoenen_GB
dc.publisherPublic Library of Science (PLoS)en_GB
dc.relation.urlhttps://www.ncbi.nlm.nih.gov/pubmed/36173959en_GB
dc.relation.urlhttp://doi.org/10.5061/dryad.c270ft8en_GB
dc.relation.urlhttp://doi.org/10.1038/s41559-020-01342-7en_GB
dc.relation.urlhttps://github.com/clsong/ReproduceChickenEggen_GB
dc.rights© 2022 Song et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.en_GB
dc.subjectCausalityen_GB
dc.subjectConsensusen_GB
dc.subjectEcosystemen_GB
dc.subjectInformation Theoryen_GB
dc.titleGeneralism drives abundance: A computational causal discovery approachen_GB
dc.typeArticleen_GB
dc.date.available2022-11-03T09:31:59Z
dc.identifier.issn1553-734X
exeter.place-of-publicationUnited States
dc.descriptionThis is the final version. Available from Public Library of Science (PLoS) via the DOI in this record. en_GB
dc.descriptionAll the datasets analyzed in this study are publicly available. The dataset of plant-hummingbird communities is available from Dryad Digital Repository dx.doi.org/10.5061/dryad.c270ft8. The dataset of coral reef fishes is available from the Reef Life Survey website dx.doi.org/10.1038/s41559-020-01342-7. The source code to produce the results is available on GitHub at https://github.com/clsong/ReproduceChickenEgg.en_GB
dc.identifier.eissn1553-7358
dc.identifier.journalPLoS Computational Biologyen_GB
dc.relation.ispartofPLoS Comput Biol, 18(9)
dc.rights.urihttp://creativecommons.org/licenses/by/4.0/en_GB
dcterms.dateAccepted2022-06-14
dc.rights.licenseCC BY
rioxxterms.versionVoRen_GB
rioxxterms.licenseref.startdate2022-06-14
rioxxterms.typeJournal Article/Reviewen_GB
refterms.dateFCD2022-11-03T09:24:58Z
refterms.versionFCDVoR
refterms.dateFOA2022-11-03T09:32:51Z
refterms.panelAen_GB
refterms.depositExceptionpublishedGoldOA
refterms.dateFirstOnline2022-09-29


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© 2022 Song et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
Except where otherwise noted, this item's licence is described as © 2022 Song et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.