Influence of host phylogeny and water physicochemistry on microbial assemblages of the fish skin microbiome
dc.contributor.author | Bell, AG | |
dc.contributor.author | McMurtrie, J | |
dc.contributor.author | Bolaños, LM | |
dc.contributor.author | Cable, J | |
dc.contributor.author | Temperton, B | |
dc.contributor.author | Tyler, CR | |
dc.date.accessioned | 2024-03-04T11:45:52Z | |
dc.date.issued | 2024-02-16 | |
dc.date.updated | 2024-03-04T11:25:28Z | |
dc.description.abstract | The skin of fish contains a diverse microbiota that has symbiotic functions with the host, facilitating pathogen exclusion, immune system priming, and nutrient degradation. The composition of fish skin microbiomes varies across species and in response to a variety of stressors, however, there has been no systematic analysis across these studies to evaluate how these factors shape fish skin microbiomes. Here, we examined 1922 fish skin microbiomes from 36 studies that included 98 species and nine rearing conditions to investigate associations between fish skin microbiome, fish species, and water physiochemical factors. Proteobacteria, particularly the class Gammaproteobacteria, were present in all marine and freshwater fish skin microbiomes. Acinetobacter, Aeromonas, Ralstonia, Sphingomonas and Flavobacterium were the most abundant genera within freshwater fish skin microbiomes, and Alteromonas, Photobacterium, Pseudoalteromonas, Psychrobacter and Vibrio were the most abundant in saltwater fish. Our results show that different culturing (rearing) environments have a small but significant effect on the skin bacterial community compositions. Water temperature, pH, dissolved oxygen concentration, and salinity significantly correlated with differences in beta-diversity but not necessarily alpha-diversity. To improve study comparability on fish skin microbiomes, we provide recommendations for approaches to the analyses of sequencing data and improve study reproducibility. | en_GB |
dc.description.sponsorship | Natural Environment Research Council (NERC) | en_GB |
dc.identifier.citation | Vol. 100(3), article fiae021 | en_GB |
dc.identifier.doi | https://doi.org/10.1093/femsec/fiae021 | |
dc.identifier.grantnumber | NE/R011524/1 | en_GB |
dc.identifier.uri | http://hdl.handle.net/10871/135462 | |
dc.identifier | ORCID: 0000-0003-0198-2205 (Bell, Ashley G) | |
dc.identifier | ORCID: 0000-0002-3667-8302 (Temperton, Ben) | |
dc.language.iso | en | en_GB |
dc.publisher | Oxford University Press (OUP) / Federation of European Microbiological Societies | en_GB |
dc.relation.url | https://www.ncbi.nlm.nih.gov/pubmed/38366921 | en_GB |
dc.rights | © The Author(s) 2024. Published by Oxford University Press on behalf of FEMS. This is an Open Access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cite | en_GB |
dc.subject | 16S | en_GB |
dc.subject | V4 | en_GB |
dc.subject | aquaculture | en_GB |
dc.subject | meta-analysis | en_GB |
dc.subject | microbiota | en_GB |
dc.subject | phylosymbiosis | en_GB |
dc.subject | physicochemical factors | en_GB |
dc.title | Influence of host phylogeny and water physicochemistry on microbial assemblages of the fish skin microbiome | en_GB |
dc.type | Article | en_GB |
dc.date.available | 2024-03-04T11:45:52Z | |
dc.identifier.issn | 0168-6496 | |
exeter.place-of-publication | England | |
dc.description | This is the final version. Available on open access from Oxford University Press via the DOI in this record | en_GB |
dc.identifier.eissn | 1574-6941 | |
dc.identifier.journal | FEMS Microbiology Ecology | en_GB |
dc.rights.uri | https://creativecommons.org/licenses/by/4.0/ | en_GB |
dcterms.dateAccepted | 2024-02-13 | |
dc.rights.license | CC BY | |
rioxxterms.version | VoR | en_GB |
rioxxterms.licenseref.startdate | 2024-02-16 | |
rioxxterms.type | Journal Article/Review | en_GB |
refterms.dateFCD | 2024-03-04T11:43:48Z | |
refterms.versionFCD | VoR | |
refterms.dateFOA | 2024-03-04T11:45:58Z | |
refterms.panel | A | en_GB |
refterms.dateFirstOnline | 2024-02-16 |
Files in this item
This item appears in the following Collection(s)
Except where otherwise noted, this item's licence is described as © The Author(s) 2024. Published by Oxford University Press on behalf of FEMS. This is an Open Access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cite